PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13058g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 256aa    MW: 28343.8 Da    PI: 5.3779
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13058g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.19e-17117152134
                      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C++Cgt++  Tp++Rrgp g+ tLCnaCGl ++ kg
  Niben101Scf13058g00006.1 117 CVHCGTSSkdTPMMRRGPAGPMTLCNACGLTWANKG 152
                               *********************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-11111164IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.447111159IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-13113165No hitNo description
Gene3DG3DSA:3.30.50.102.6E-15115158IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.05E-14116157No hitNo description
PROSITE patternPS003440117144IPR000679Zinc finger, GATA-type
PfamPF003202.0E-14117152IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MNSHIQALNV DNHFSAGGEE VPASSGKAVQ SVFQILGGYE YSPDSNQEDS VDYPLHCADP  60
KRLESLIRFG EKGKGDAMER KSDMMSAKKM QHKNGQFARK GSCEPKQDDN PPEETRCVHC  120
GTSSKDTPMM RRGPAGPMTL CNACGLTWAN KGIMRNLYMA SYNNTLLKEL EDEDHSNSDY  180
GAPPRSVSYQ VSSSASDSSV LAARKRLRYI PLEESHSISI CLLIMEMKDF MYLLQETLVD  240
IGNASKTEID IPANFD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613072.14e-92PREDICTED: GATA transcription factor 25-like
RefseqXP_016459799.14e-92PREDICTED: GATA transcription factor 25-like
TrEMBLK4BU914e-55K4BU91_SOLLC; Uncharacterized protein
STRINGSolyc04g076530.2.11e-54(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140301012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-27ZIM-like 1